IRC log of hcls on 2017-06-06

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logging to http://www.w3.org/2017/06/06-hcls-irc
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RRSAgent, make logs world
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Zakim, this will be HCLS
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ok, trackbot
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Meeting: Semantic Web Health Care and Life Sciences Interest Group Teleconference
15:02:22 [trackbot]
Date: 06 June 2017
15:04:36 [dbooth]
Chair: David Booth
15:04:51 [dbooth]
Topic: Example of connecting FHIR/RDF to external ontology
15:07:18 [dbooth]
Present: EricP, David Booth, Gopi, Ken Lord
15:07:42 [dbooth]
eric: Could connect to FMA, then ask questions like "is this a member of this class"?
15:11:27 [dbooth]
gopi: Created a decision support ont in OWL. Plan to go back and use FHIR RDF data. Not annotating data with an external ont, but using another model with FHIR data. But I have plans for SNOMED terms.
15:12:36 [dbooth]
ken: Are you developing specific FHIR profiles based on FHIR resources? Where do you capture the data for your instance of FHIR RDF?
15:12:53 [dbooth]
gopi: Haven't started yet, but will be using FHIR Observations.
15:16:44 [dbooth]
... If there's a diagnostic criteria of pain on left side of face, but there is pain on the left cheek, then that should qualify.
15:16:57 [ericP]
http://xiphoid.biostr.washington.edu/fma/fmabrowser-hierarchy.html?search=Arm&entryPoint=none&extendHierarchy=false
15:17:38 [ericP]
http://build.fhir.org/observation-example-bloodpressure.ttl.html
15:19:19 [ericP]
fhir:CodeableConcept.coding [ a fma:999 ]
15:19:19 [dbooth]
eric: I pulled up the FMA identifier for upper arm. If we look at that observation, and at body site (half way down the page), that's a right arm. If I could get the FMA identifier out, I could say that it has an additional codeable concept body site
15:20:01 [dbooth]
... Then I would have upper arm. I could then ask for BP measurements on this limb.
15:21:01 [dbooth]
ken: Could use Gopi's example with that.
15:24:45 [ericP]
http://build.fhir.org/observation-example-bmd.ttl.html 71341001:272741003=7771000 tumor density left femur
15:26:31 [dbooth]
ACTION: Gopi to report on the progress of his work
15:26:31 [trackbot]
Error finding 'Gopi'. You can review and register nicknames at <http://www.w3.org/2014/HCLS/track/users>.
15:27:57 [dbooth]
ACTION: Eric to look at FHIR examples for potential use with FMA ontology
15:27:57 [trackbot]
Created ACTION-87 - Look at fhir examples for potential use with fma ontology [on Eric Prud'hommeaux - due 2017-06-13].
15:30:22 [dbooth]
Topic: Mini-ontology generation for status codes and other codes (Harold Solbrig)
15:30:31 [dbooth]
ken: Is there an ont of status codes?
15:30:44 [dbooth]
eric: Not sure.
15:31:41 [dbooth]
dbooth: The point is to have more clarity about the relationships between status codes.
15:32:19 [dbooth]
... And formally capture them in ontology.
15:32:43 [dbooth]
... Rob Hausam is bringing that discuss back to the vocab group.
15:33:07 [dbooth]
ken: If you group status codes (such as final) are there rules around that?
15:33:32 [dbooth]
s/discuss/discussion/
15:34:07 [dbooth]
eric: Yes, though we'd be unlikely to go outside of OWL.
15:34:16 [dbooth]
Present+ Ken_Lord
15:34:23 [dbooth]
... So you cannot mix individuals and classes.
15:36:40 [dbooth]
ADJOURNED
15:38:59 [dbooth]
rrsagent, draft minutes
15:38:59 [RRSAgent]
I have made the request to generate http://www.w3.org/2017/06/06-hcls-minutes.html dbooth
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