See also: IRC log
<ericP> scribenic: Donald_Doherty
[Susie] Agenda
[Susie] Literature search
<Susie> literature
<Susie> Recommended paper
[Susie] Compiled a good list. Especially relevant is "A framework for characterizing drug information sources"
Paper has very useful table with 39 dimensions of drug sources.
[Susie] Bio2RDF and LarKC papers have a lot of relevance.
[Susie] We can invite people who have done relevant work to speak on our call.
<ericP> Susie: Bio2RDF and LarKC papers have a lot of relevance.
<ericP> ... We can invite people who have done relevant work to speak on our call.
Chris: Invite Bio2RDF people
talk
... They're running into interesting problems of
scalability.
... Their goal is to bring together as much data as they can
and then find use cases.
Susie: Interesting that they're taking opposite approach as us.
Spoke about use cases yesterday with Kei
scribe: We have F2F next week.
During breakout sessions we'll do work on use cases.
... We should define a use case that would be useful for both
pharmaceutical companies and physicians.
... Scope use case to therapeutic area.
... One thought was respiratory diseases
... However neuroscience will be focus as long as it can be
extended to respiratory
... Interested in co-morbitity. Drug targeting multiple
diseases, etc.
... Nice to have links that go from drugs to disease.
<Susie> Business case
scribe: also links from drug to
disease to biology to symptoms.
... Good to use clinicaltrials.gov data.
... Interest from three actors: patients, physicians,
pharma
... Defined what sorts of questions patients ask.
... For instance "What other drugs are available for this
disease?"
... Defined what sorts of questions physicians ask.
... Wondered if we could link to COI work.
... Defined sorts of questions phara would ask.
... Pharma want to ask a lot of bio questions related to
drugs.
... These questions would link into BioRDF work.
Oktie: I'm currently working on
the clinicaltrials.gov data
... We're working on algorithms on finding links among data. We
haven't published yet. Within about a month we'll have
something ready.
... action to go back to his group to see about publishing
data
Susie: Will continue discussions with Bosse next week
Eric: Do you expect this data set to touch identifiers that NCBI will serve?
Susie: Talk about hosting workshop at NIH during Jan./Feb. timeframe dealing with URIs
Sound quality is very bad!
Good!
Oktie: Use cases go back to the idea of linked data. Wonder if we should publish linked data even if we have no use case.
Chris: I see no problem with the idea.
Susie: Same here. However, it is
important to be able to show
... the value of what we've done.
... Chris sent an email to the main list about a special issue
of linked data and SW.
... I'd like to see us submit a paper.
<Susie> IJSWIS special issue on linked data
Susie: Data set exploration
<Susie> Data set evaluation
Chris: Two tables. One table has
a list of data already available.
... the other table has a list that are not yet available as
linked data.
Susie: Focus on something general
and then perhaps bring specific company data set in.
... Idea of developing a cloud sounds really good.
... At Lilly I'm trying to create a high-level ontology linking
areas related to bio related to disease, market opportunity,
clinical trials, etc. Drugs could be a component.
... Chris what are you thinking about for browsers,
visualization tools...
Chris: You can use all different
browsers to pick up data.
... We could go to the LSID browser...
Susie: There have been URI/LSID
wars.
... prefer to use URIs.
Chris: The linked data must be HTTP based.
<Susie> F2F URL
Susie: Good progress! See you in 2 weeks.
Eric... are you publishing this for me?
This is scribe.perl Revision: 1.133 of Date: 2008/01/18 18:48:51 Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/ Guessing input format: RRSAgent_Text_Format (score 1.00) No ScribeNick specified. Guessing ScribeNick: Donald_Doherty Inferring Scribes: Donald_Doherty Default Present: +049308385aaaa, Susie, +0049308385aabb, Don_Doherty, EricP, [IBM] Present: +049308385aaaa Susie +0049308385aabb Don_Doherty EricP [IBM] WARNING: No meeting chair found! You should specify the meeting chair like this: <dbooth> Chair: dbooth Got date from IRC log name: 15 Oct 2008 Guessing minutes URL: http://www.w3.org/2008/10/15-hcls-minutes.html People with action items:[End of scribe.perl diagnostic output]