Use SPARQL to integrate…

• prefix go: <http://purl.org/obo/owl/GO#>

• prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>

• prefix owl: <http://www.w3.org/2002/07/owl#>

• prefix mesh: <http://purl.org/commons/record/mesh/>

• prefix sc: <http://purl.org/science/owl/sciencecommons/>

• prefix ro: <http://www.obofoundry.org/ro/ro.owl#>

• select ?genename ?processname

• where

• { graph <http://purl.org/commons/hcls/pubmesh>

• { ?paper ?p mesh:D017966 .

• ?article sc:identified_by_pmid ?paper.

• ?gene sc:describes_gene_or_gene_product_mentioned_by ?article.

• }

• graph <http://purl.org/commons/hcls/goa>

• { ?protein rdfs:subClassOf ?res.

• ?res owl:onProperty ro:has_function.

• ?res owl:someValuesFrom ?res2.

• ?res2 owl:onProperty ro:realized_as.

• ?res2 owl:someValuesFrom ?process.

• graph <http://purl.org/commons/hcls/20070416/classrelations>

• {{?process <http://purl.org/obo/owl/obo#part_of> go:GO_0007166 }

• union

• {?process rdfs:subClassOf go:GO_0007166 }}

• ?protein rdfs:subClassOf ?parent.

• ?parent owl:equivalentClass ?res3.

• ?res3 owl:hasValue ?gene.

• }

• graph <http://purl.org/commons/hcls/gene>

• { ?gene rdfs:label ?genename }

• graph <http://purl.org/commons/hcls/20070416>

• { ?process rdfs:label ?processname}

• }