IRC log of hcls on 2007-03-08

Timestamps are in UTC.

15:56:39 [RRSAgent]
RRSAgent has joined #hcls
15:56:40 [RRSAgent]
logging to http://www.w3.org/2007/03/08-hcls-irc
15:57:12 [eneumann]
rrsagent, set log world-visible
15:59:07 [Don]
Don has joined #hcls
16:03:19 [eneumann]
zakim, this is hcls
16:03:20 [Zakim]
ok, eneumann; that matches SW_HCLS()11:00AM
16:03:26 [eneumann]
zakim, who is here?
16:03:26 [Zakim]
On the phone I see Don_Doherty, John_Barkley, eneumann, Susie, Davide_Zaccagnini
16:03:28 [Susie]
Susie has joined #hcls
16:03:28 [Zakim]
On IRC I see Don, RRSAgent, Zakim, eneumann, ericP
16:03:58 [helen]
helen has joined #hcls
16:04:07 [Zakim]
+Olivier_Bodenreider
16:04:20 [Davide]
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16:04:36 [Zakim]
+Tanya_Hongsermeier
16:05:41 [Zakim]
+[Agfa]
16:06:02 [eneumann]
zakim, [Agfa] is helen
16:06:02 [Zakim]
+helen; got it
16:06:13 [Zakim]
+ +1.617.253.aaaa
16:07:01 [Tonya]
Tonya has joined #hcls
16:07:19 [alanr]
alanr has joined #hcls
16:09:11 [eneumann]
zakim, aaaa is alanr
16:09:11 [Zakim]
+alanr; got it
16:10:13 [eneumann]
zakim, pick a victim
16:10:13 [Zakim]
Not knowing who is chairing or who scribed recently, I propose Don_Doherty
16:10:38 [eneumann]
scribe is Don_Doherty
16:11:54 [Don]
[EN] Alan give a quick summary of F2F
16:12:18 [eneumann]
zakim, scribe is Don_Doherty
16:12:18 [Zakim]
sorry, eneumann, I do not recognize a party named 'scribe'
16:12:40 [Don]
[AR] Start on getting ortholog info
16:12:40 [Zakim]
+[IPcaller]
16:13:13 [Don]
[AR] Work on disease annotations (MeSH, MGD) rat and human
16:13:45 [Don]
[AR] Talk with Bill Bug and Mariane Maritone ...OWL version of brain atlas
16:13:50 [samwaldmatthias]
samwaldmatthias has joined #hcls
16:13:55 [eneumann]
scribe is Don
16:14:03 [Don]
[AR] Cell line ontology contact
16:14:28 [Don]
[AR] Models for Allen Brain Atlas triples
16:14:55 [eneumann]
Scribe is Don
16:15:02 [Don]
[AR] First model a couple of examples...John B. volunteers
16:15:11 [eneumann]
scribe: Don
16:15:52 [Susie]
q+
16:16:26 [eneumann]
zakim, IPcaller is samwaldmatthias
16:16:26 [Zakim]
+samwaldmatthias; got it
16:16:53 [Don]
[AR] probably focus on mouse and human
16:17:26 [eneumann]
http://lists.w3.org/Archives/Public/public-semweb-lifesci/2007Mar/0056.html
16:17:29 [Don]
[AR] carefully distinguish data from things in the world
16:17:42 [eneumann]
ack Susie
16:21:30 [Don]
[EN] Action: Data conversion team will convene over telephone this week
16:21:32 [eneumann]
Action: Demo data team to have TC/meeting this monday for deciding data conversion sets
16:22:57 [eneumann]
data team is: AlanR, John Barkely, Matthias S, Susie S, Don D, possibly Gwen and Marko
16:23:12 [Don]
[AR] Need to get Oracle up and running on a virtual machine
16:26:01 [Don]
[EN] could we use XSLT?
16:26:47 [eneumann]
Action: identify PubChem subset for demo
16:27:08 [Don]
[AR] Identify subset for demo, if subset looks useful select method for conversion
16:27:40 [alanr]
http://sw.neurocommons.org/2007/annotations.owl
16:27:46 [alanr]
http://sw.neurocommons.org/2007/aba.owl
16:28:18 [Don]
[AR] Annotatins for Allan Brain Atlas
16:29:00 [alanr]
and NLP
16:30:14 [Zakim]
+[MIT528]
16:30:25 [ericP]
Zakim, MIT528 is me
16:30:25 [Zakim]
+ericP; got it
16:32:35 [Don]
[HC] Considered a demo matching synonyms across databases?
16:33:24 [Don]
[AR] gene "is identified by" may be multiply valued
16:34:07 [Don]
[AR] orthology information my help...based on triple store ...not synonyms
16:35:16 [Don]
[AR] uses SameAs and inference
16:38:10 [Don]
[HC] add layer of mapping that makes the connections
16:38:10 [ericP]
interesting, sounds like it could be a query premise
16:39:07 [Don]
[EN] Help with the UI?
16:39:21 [Don]
[AR] extend the Google maps interface
16:40:05 [Don]
[AR] save annotions to triple store
16:41:42 [alanr]
http://prefuse.org/gallery/
16:42:21 [eneumann]
http://simile.mit.edu/exhibit
16:42:36 [samwaldmatthias]
http://lists.w3.org/Archives/Public/public-semweb-lifesci/2007Jan/0229.html
16:42:43 [Don]
Perfuse is thick client...Simile is thin client
16:42:57 [samwaldmatthias]
screenshots i made of ontowiki: http://neuroscientific.net/res/ontowiki-screenshots/
16:43:13 [Don]
Ontowiki is also thin client...right?
16:44:40 [Don]
Is it important if the demo is browser based or not?
16:44:56 [alanr]
e.g http://prefuse.org/gallery/fisheyemenu/
16:45:10 [Don]
[EN] Action: Looking at UI...Mattais
16:47:29 [Zakim]
-Olivier_Bodenreider
16:48:22 [Don]
[EN] Anyone look at Perfuse as a possible UI
16:48:27 [eneumann]
Action: Matthias to see potential uses of Ontowiki UI, EricN on Exhibit
16:49:56 [Don]
[AR] Help form what the demo will look like
16:50:19 [Don]
[EN] Be creative and innovative with the UI
16:51:08 [Don]
[AR] Network visualization...the reason graphs haven't been useful is due to very literal RDF to graph translations
16:51:35 [Don]
[AR] among enties what info would you like visualized?
16:52:36 [Don]
[EN] Meeting Monday on data and UI
16:54:00 [helen]
Alan, if your case requires using some rules for your mapping, I am happy to help
16:54:24 [Zakim]
-Susie
16:54:25 [Zakim]
-Tanya_Hongsermeier
16:54:27 [Zakim]
-Davide_Zaccagnini
16:54:28 [Zakim]
-alanr
16:54:28 [Zakim]
-helen
16:54:33 [Zakim]
-John_Barkley
16:54:37 [Zakim]
-samwaldmatthias
16:54:56 [eneumann]
rrsagent, draft minutes
16:54:56 [RRSAgent]
I have made the request to generate http://www.w3.org/2007/03/08-hcls-minutes.html eneumann
16:55:23 [eneumann]
rrsagent, bye
16:55:23 [RRSAgent]
I see 3 open action items saved in http://www.w3.org/2007/03/08-hcls-actions.rdf :
16:55:23 [RRSAgent]
ACTION: Demo data team to have TC/meeting this monday for deciding data conversion sets [1]
16:55:23 [RRSAgent]
recorded in http://www.w3.org/2007/03/08-hcls-irc#T16-21-32
16:55:23 [RRSAgent]
ACTION: identify PubChem subset for demo [2]
16:55:23 [RRSAgent]
recorded in http://www.w3.org/2007/03/08-hcls-irc#T16-26-47
16:55:23 [RRSAgent]
ACTION: Matthias to see potential uses of Ontowiki UI, EricN on Exhibit [3]
16:55:23 [RRSAgent]
recorded in http://www.w3.org/2007/03/08-hcls-irc#T16-48-27