16:03:44 <RRSAgent> RRSAgent has joined #hcls
16:03:44 <RRSAgent> logging to http://www.w3.org/2006/12/14-hcls-irc
16:03:45 <helen> Hi, Eric
16:03:56 <mscottm> mscottm has joined #hcls
16:04:00 <helen> could not get on the phone
16:04:09 <helen> is the channel open?
16:04:16 <mscottm> yes
16:04:26 <Don> Don has joined #HCLS
16:05:10 <BillBug> BillBug has joined #hcls
16:05:17 <eneumann> rrsagent, set minutes public
16:05:17 <RRSAgent> I'm logging. I don't understand 'set minutes public', eneumann.  Try /msg RRSAgent help
16:05:32 <eneumann> rrsagent, set draft public
16:05:32 <RRSAgent> I'm logging. I don't understand 'set draft public', eneumann.  Try /msg RRSAgent help
16:05:44 <eneumann> rrsagent, set notes public
16:05:45 <RRSAgent> I'm logging. I don't understand 'set notes public', eneumann.  Try /msg RRSAgent help
16:06:02 <mscottm> Hint: I've had problems getting on Zakim before because I wasn't holding the touch tone keys down long enough.
16:07:38 <helen> zakim who is here
16:07:45 <alanr> alanr has joined #hcls
16:07:55 <helen> Zakim, who is here
16:07:55 <Zakim> helen, you need to end that query with '?'
16:08:15 <jluciano2> jluciano2 has joined #hcls
16:08:19 <helen> Zakim, who is here?
16:08:19 <Zakim> sorry, helen, I don't know what conference this is
16:08:22 <Zakim> On IRC I see jluciano2, alanr, BillBug, Don, mscottm, RRSAgent, helen, Zakim, eneumann, samwaldmatthias
16:09:29 <helen> agenda+ final status and action for the HCLS paper
16:10:24 <helen> Kei: Don to work with vipu on ontology
16:10:55 <eneumann> zakim, this is hcls#
16:10:55 <Zakim> sorry, eneumann, I do not see a conference named 'hcls#' in progress or scheduled at this time
16:10:57 <helen> Kei: need more input on "key challenges"
16:11:04 <eneumann> zakim, this is hcls
16:11:04 <Zakim> ok, eneumann; that matches SW_HCLS()11:00AM
16:11:19 <eneumann> zakim, who's here?
16:11:19 <Zakim> On the phone I see Eric_Neumann, Kei, Don_Doherty, Don_Doherty.a, Joanne_Luciano, ??P43, Bill_Bug, Alan_Ruttenberg, [Agfa]
16:11:21 <Zakim> On IRC I see jluciano2, alanr, BillBug, Don, mscottm, RRSAgent, helen, Zakim, eneumann, samwaldmatthias
16:11:56 <eneumann> zakim, who's yalking
16:11:56 <Zakim> I don't understand 'who's yalking', eneumann
16:12:09 <eneumann> zakim, who's talking?
16:12:19 <Zakim> eneumann, listening for 10 seconds I heard sound from the following: Kei (65%), Bill_Bug (4%)
16:13:17 <helen> need to address callenges in B2B
16:13:46 <helen> <kei> anyone thinking about literature mining?
16:14:21 <helen> <Alan>: will take the action to write this point
16:15:12 <helen> <Kei>maybe Davide can work with Alan for NLP on text mining
16:15:26 <helen> zakim, who's talking?
16:15:36 <Zakim> helen, listening for 10 seconds I heard sound from the following: Kei (42%), Joanne_Luciano (5%), Bill_Bug (28%)
16:17:15 <helen> <Alan> willing to do a first review pass over weekend
16:17:49 <helen> <Alan> most content is already there, 
16:18:26 <helen> <Alan> editing need to start right away
16:19:20 <eneumann> Someone is breathing to loudly...
16:19:37 <vipul> vipul has joined #hcls
16:20:03 <Zakim> +Vipul_Kashyap
16:20:42 <helen> Zakim, who is here
16:20:42 <Zakim> helen, you need to end that query with '?'
16:20:52 <helen> Zakim, who is here?
16:20:52 <Zakim> On the phone I see Eric_Neumann, Kei, Don_Doherty, Don_Doherty.a, Joanne_Luciano, ??P43, Bill_Bug, Alan_Ruttenberg, [Agfa], Vipul_Kashyap
16:20:54 <Zakim> On IRC I see vipul, jluciano2, alanr, BillBug, Don, mscottm, RRSAgent, helen, Zakim, eneumann, samwaldmatthias
16:21:24 <samwaldmatthias> I would suggest to remove the one with the properties.
16:22:58 <eneumann> If an ontology figure is used, I would also suggest it is not a protege diagram, but abstracted to a simpler form.
16:23:19 <helen> <Helen>+1
16:23:43 <helen> <vipul> ontology section need to be refined, 
16:24:04 <eneumann> zakim, helen is [Agfa]
16:24:04 <Zakim> sorry, eneumann, I do not recognize a party named 'helen'
16:24:21 <eneumann> zakim, [Agfa] is helen
16:24:21 <Zakim> +helen; got it
16:24:24 <helen> <Kei> second figure with details may be deleted 
16:25:47 <helen> <Kei> higher level the better to explain the vision
16:26:37 <helen> <Eric>: suggest to have a figure to show various groups that are working on ontology and related knowledge base, and their over-lap
16:28:03 <eneumann> I'll add, the goal is to show the broad re-use of components, as well as the connectivity across multiple sub-domains (biomed research, healthcare, clinical trials, etc)
16:28:12 <helen> <Bill> use differnt color to show over-lap on concept level and data source level
16:29:03 <helen> <Alan> diagram will have to support with text
16:32:02 <helen> <Bill> 2.2. Need to show the identified use cases
16:33:01 <eneumann> for a figure, see http://esw.w3.org/topic/HCLS/OntologyTaskForce/OntologyCovering
16:34:06 <helen> <Bill>will send PPT to vipul on ontology efforts and concept mapping
16:35:04 <helen> <Bill> need to 1. specify the domain we worked on, 2. exsiting efforts and projects
16:36:02 <helen> <Kei> will contact individual for the needed pieces
16:37:12 <helen> Helen, Vipul and Bill are still working on their sections. 
16:37:52 <helen> q+
16:39:07 <eneumann> ack helen
16:43:00 <helen> <Alan> need go through the first editing and flag places need citation
16:43:36 <helen> <Helen> ACPP group has concern about the "bed-side", i.e. clinical trials, guidelines on patient treatment
16:44:20 <helen> <Alan> Suggest Helen to go through the paper and identify places need to add content pertaining bed-side 
16:45:11 <samwaldmatthias> We cannot send the .doc or .pdf export directly to BMC. In needs to be formatted according to a template.
16:45:21 <samwaldmatthias> Furthermore, we need to get the citations right.
16:45:47 <eneumann> zakim, who's talking?
16:45:52 <samwaldmatthias> Diagrams need to be submitted in .eps or .pdf (vector graphics)
16:45:54 <helen> <Eric> Kei needs to take the lead and tell individual's effort
16:45:58 <Zakim> eneumann, listening for 10 seconds I heard sound from the following: Kei (21%), ??P43 (13%), Alan_Ruttenberg (24%)
16:51:43 <helen> <Bill> consider to write biblio in .doc and end notes
16:52:35 <Zakim> -Vipul_Kashyap
16:54:32 <helen> <Alan> move content out of googleDoc, and starting editing tomorrow night
16:55:56 <helen> <eric> tomorrow night (Dec. 15), all writing should stop, 
16:56:45 <helen> <eric> editing need to be done in serial
16:58:03 <eneumann> ACTION: Content will be moved off from googleDoc to Word COP Dec 15; to be serially edited by Alan, Helen, Vipul, and returned to Kei Dec 20.
16:59:28 <eneumann> s/COP/COB
17:00:05 <helen> <Alan> need to mention AJ Chen's work on publishing
17:00:53 <jluciano2> i need to go.... have a hard stop at noon.  Happy Holidays!
17:02:01 <helen> <eric> no Tcon next week, next call will be in Jan. 4
17:02:17 <alanr> http://esw.w3.org/topic/HCLS/ScientificPublishingTaskForce
17:03:12 <helen> Next call will be in Jan. 11, instead
17:05:14 <helen> <Bill> At high level, PD and AD have many phentype similarities, hope to state in vision section of this paper
17:05:46 <helen> <Bill> bring mouse model to clinical patient treatment
17:05:55 <helen> happy holiday to everyone
17:05:55 <Zakim> -Kei
17:05:56 <Zakim> -Don_Doherty.a
17:05:57 <Zakim> -Bill_Bug
17:05:59 <Zakim> -Don_Doherty
17:06:00 <Zakim> -Alan_Ruttenberg
17:06:01 <Zakim> -Joanne_Luciano
17:06:02 <Zakim> -Eric_Neumann
17:06:03 <Zakim> -helen
17:06:08 <eneumann> rrsagent, draft minutes
17:06:08 <RRSAgent> I have made the request to generate http://www.w3.org/2006/12/14-hcls-minutes.html eneumann
17:06:12 <BillBug> chappy cholidays!
17:06:13 <Zakim> -??P43
17:06:15 <Zakim> SW_HCLS()11:00AM has ended
17:06:16 <Zakim> Attendees were [IPcaller], Alan_Ruttenberg, Eric_Neumann, Kei, Don_Doherty, Joanne_Luciano, Bill_Bug, Vipul_Kashyap, helen
17:06:24 <eneumann> zakim, bye
17:06:24 <Zakim> Zakim has left #hcls
17:06:31 <eneumann> rrsagent, bye
17:06:31 <RRSAgent> I see 1 open action item saved in http://www.w3.org/2006/12/14-hcls-actions.rdf :
17:06:31 <RRSAgent> ACTION: Content will be moved off from googleDoc to Word COP Dec 15; to be serially edited by Alan, Helen, Vipul, and returned to Kei Dec 20. [1]
17:06:31 <RRSAgent>   recorded in http://www.w3.org/2006/12/14-hcls-irc#T16-58-03