See also: IRC log
Scott: TMO summary
Michel: Finishing up the final revisions for paper
<mscottm> Joanne is "herding all the cats" - nice :)
Michel: draft ready today,
submission early next week
... then want to look at specific tasks: SNPs and genetic
variation
... looking at genetic testing, alleles and significance
... Matthias organizing paper around this
... then we want to develop more semantically interlinked
clinical records
... reaching out to see if others have places to incorporate
semweb
Scott: We have an inviation for a
special issue; how to RDFize SNP identifiers and connect to
patient data
... also TMO, the podium presentation was accepted at TBI
Joanne: Conference is March 7-9
<ericP> per inviting EHR systems, Ben Adida of Indivo is already interested in expressing their EHRs in RDF. I2B2 folks still more skeptical
Scott: Recently ran across person
in Harland's(?) group
... Task force is TM or TMO? Recently blogged about the task
forces.
<mscottm> Didn't actually blog about the task forces yet http://www.w3.org/blog/hcls
Susie: Make sure that messaging
is well described going forward.
... TMO, not just focussed on ontology any more
Scott: Terminology task force:
Picking up again
... trying to talk about clinical reports, in context of breast
cancer
... having trouble getting matched records about same
patient
... but we've gotten some good data, now looking at how to
RDFize
... triple store is coming soon
... complicating factor is that hospitals are just now starting
to put records on-line
... situation is still settling as to contents
... US radiology systems are isolated, not normalized
Joanne: Would like to see more
Terminology-TMO cooperation
... can we combine triple stores?
<matthias_samwald> (just dialed in again)
Scott: Focussed now on breast
cancer in Terminology
... we could consider how to work w. i2b2, of interest to
everybody
ericP: Tim Lebo working on EHR expression
Susie: i2b2 has ontology hive, is a navigable tree
ericP: They are talking about
hierarchy of terms; provide tree-space for finding
concepts
... but no real graph
Susie: i2b2 has talked about integrating actual ontologies
ericP: i2b2 may be using OWL in
the snomed-mapping sense
... Integrating TMO w Terminology: Tim Lebo working on EHR
modelling in EHR
<mscottm> ACTION: Scott gives sample RDF to Tim to put in Indivo [recorded in http://www.w3.org/2011/02/03-hcls-minutes.html#action01]
ericP: give Tim what to express
Scott: LODD, want an article that
summarizes best practices
... Elgar made a work-flow diagram
... two main use cases: relational and XML
... Indivo XML, explaining how it works, fallback position
Joanne: RPI is giving a hands-on
tutorial at CSHALS
... LODD and RPI group should review tutorial
... outline for tutorial is on the CSHALS site
Scott: LODD contents is mostly on
the wiki
... Where does following your nose w. cool URIs lead?
... Ex, when you have data where URIs don't resolve, this has
always been one of the foo-bar problems
... extra effort to produce resolvable URIs, then this is where
there will be gaps
... so think of federated systems as a stop-gap
... on the way to deep semantic views
... create semweb with federated views, even if URIs don't
resolve by themselves
Susie: Focus of paper should be
around helping people use the data
... but, when to federate is an interesting topic
Scott: BioRDF is developing
nicely, sign-on from interested parties
... NIST will tell us about microarray requirements
Joanne: We are covering microarray in the tutorial
Scott: Attach gene lists to
mage-tabs
... one of the steps, then we need an RDF analogue for gene
lists; all has gotten started
... Gene Atlas group is finishing up some RDF
... hoping to hear from them about results, hopefully align all
this
... There are some datasources that will roll in
... OPS Open Pharmacological Space
... such projects will create some data, have written on the
blog about this
<mscottm> s/NIF/NIST/
This is scribe.perl Revision: 1.135 of Date: 2009/03/02 03:52:20 Check for newer version at http://dev.w3.org/cvsweb/~checkout~/2002/scribe/ Guessing input format: RRSAgent_Text_Format (score 1.00) FAILED: s/NIF/NIST/ No ScribeNick specified. Guessing ScribeNick: bobP Inferring Scribes: bobP WARNING: No "Topic:" lines found. Default Present: Bob_Powers, +1.610.651.aaaa, +1.518.276.aabb, +20416aacc, [IPcaller], EricP, +1.781.431.aadd Present: Bob_Powers +1.610.651.aaaa +1.518.276.aabb +20416aacc [IPcaller] EricP +1.781.431.aadd WARNING: No meeting title found! You should specify the meeting title like this: <dbooth> Meeting: Weekly Baking Club Meeting WARNING: No meeting chair found! You should specify the meeting chair like this: <dbooth> Chair: dbooth Got date from IRC log name: 03 Feb 2011 Guessing minutes URL: http://www.w3.org/2011/02/03-hcls-minutes.html People with action items: gives rdf sample scott WARNING: No "Topic: ..." lines found! Resulting HTML may have an empty (invalid) <ol>...</ol>. Explanation: "Topic: ..." lines are used to indicate the start of new discussion topics or agenda items, such as: <dbooth> Topic: Review of Amy's report[End of scribe.perl diagnostic output]