Name |
Institution |
Paper Title |
URI |
Andersson, Bo |
Astra Zeneca Medical Informatics /
Clinical Science |
RDF/OWL and LSID can help Pharma out
from the InfoMaze |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0049/We_believe_RDF__OWL_and_LSID_can_help_Pharma_out_from_the_InfoMaze__2004-09-15.htm |
Atwood, Tom |
Data Grid |
Data Grid – W3C Semantic Web for Life
Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/att-0007/W3C_SWLS_Position.pdf |
Bader, Gary |
Memorial Sloan-Kettering Cancer
Center |
BioPAX Position Paper |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0041/w3c-position-paper_BioPAX.pdf |
Bangs, Alex |
Entelos |
Entelos Position Paper on Semantic Web
for Life Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0048/Entelos_Position_Paper_for_W3C_Workshop_on_Semantic_Web_for_Life_Sciences.pdf |
Brewer, Judy |
W3C |
An Application Use Case for
Semantically-Supported Research in Rare Disorders |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/0044.html |
Carey, Vincent |
Harvard Medical School |
Semantic web support for biostatistics
with R/Rswub |
http://www.biostat.harvard.edu/~carey/hbsfin.html |
Catton, Chris |
Image Bioinformatics Lab, University of
Oxford |
The use of Named Graphs to enable
ontology evolution |
http://www.bioimage.org/pub/paradigm.htm |
Chen, Helen |
AGFA Healthcare |
|
|
Cheung,
Kei |
Yale Center for Medical
Informatics |
A semantic web approach to integrating
heterogeneous yeast genome data |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0014/yeast_hub_position_pdf.pdf |
Chervitz,
Steve |
Affymetrix |
Semantic Web for Data Interpretation
and Integration: Lessons Learned from Scientific Publishing and the
Distributed Annotation System |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Nov/att-0000/Affy_SemWeb-LifeSci_position_paper.pdf |
Clark,
Kendall |
MIND (University of
Maryland) |
Science Publishing and the Sematnic
Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0024/SciencePublishingAndTheSemanticWeb.pdf |
Clark, Tim |
Harvard Medical School / Mass
General |
A KnowledgeBase Project for Alzheimer
Disease Research |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0035/MGH-AlzForum_SemWeb_paper.doc |
Cline, Melissa |
Affymetrix |
The Effects of Alternative Splicing on
Transmembrane Proteins in the Mouse Genome |
http://www.affymetrix.com/community/publications/affymetrix/tmsplice/index.affx |
Cooper, James |
IBM |
Automatic discovery and annotation of
organic chemical names in patents |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/0015.html |
Covitz, Peter |
National Cancer Institue (Center for
Bioinformatics) |
OWL/RDF/LSID Utilization in NCI Cancer
Research Infrastructure |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0039/W3_Position_Paper.htm |
Cummings,
Michael |
UMIACS |
|
http://lists.w3.org/Archives/Public/public-swls-ws/2004Nov/att-0004/hashmi_et_al_2004.pdf |
Dameron, Oliver |
Stanford Medical Informatics |
Accessing and Manipulating Ontologies
Using Web Services |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0031/dameron04w3c.pdf |
Das, Souripriya |
Oracle |
Querying Relational Data with Semantic
Domains using SQL in Oracle RDBMS |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0038/semlife_ps_final.pdf |
Devignes,
Marie-Dominique |
LORIA équipe Orpailleur / Université
Henri Poincaré |
Intelligent Access to Genomic Sources
on the Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdfhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdf |
Dewey, Forbes |
MIT / CSBi |
A Unique Opportunity in Biological
Information Standards |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0066/W3C-ConferencePaperC-2004-10-27.pdf |
Dong, Hui |
Umass Boston |
Position Paper |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0043/positionpaper.pdf |
Dotan, Dolev |
Technion – Israel Institute of
Technology |
The Bioinformatics Assay Environment:
towards an end-user interface to the SW-LS |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0061/SW-LS.htm |
Eils, Roland |
German Cancer Research
Center |
(Annotea, OWL, LSID) |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0005/loa.html |
Esteva, Juan |
Intelligent Solutions |
A Framework for Annotating
High-Throughput Genome-wide Screens |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0065/Chemical_Structure_Access_w3c.pdf |
Fan, Liju |
KEVRIC, An IMC Company |
MGED Ontology Position Paper |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0042/MO_Position_Paper.pdf |
Farag, Wafik |
SkyPrise |
Extending RDF for
Decisionmaking |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0045/DiBase-W3C-Oct2004-2.pdf |
Farmer, Andrew |
National Center for Genome
Resources |
Explorations into the client-side of
the semantic web: ISYS |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0046/W3C_Position_Paper__The_Client-side_of_the_Semantic_Web.html |
Fontana, Walter |
Harvard Systems Biology |
Lab-to-Lab Connectivity and Semantics
in the Life Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/att-0008/semwebls2.pdf |
Forsberg,
Kersten |
Astra Zeneca Medical Informatics /
Clinical Science |
RDF/OWL and LSID can help Pharma out
from the InfoMaze |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0049/We_believe_RDF__OWL_and_LSID_can_help_Pharma_out_from_the_InfoMaze__2004-09-15.htm |
Frank, Stefan |
German Cancer Research
Center |
(Annotea, OWL, LSID) |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0005/loa.html |
Fukushige,
Yoshio |
Matsushita / W3C |
Representing Probabilistic
Knowledge in the Semantic Web |
http://www.w3.org/2004/09/13-Yoshio/PositionPaper.html |
Galdzicki,
Michal |
Fujitsu Laboratories of
America |
Bio-Central – Semantic Knowledgebase
of Biomolecular Interaction Data |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0052/Bio-Central_PositonPaperSW-LS-2004.doc |
Goble, Carole |
University of Manchester |
The Semantic Web: Service Discovery and
Provenance in myGrid |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0016/semantic_web_for_life_sciences_position.pdf |
Golden, James |
Life Science Insights |
Abstract |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/0000.html |
Hartel, Frank |
National Cancer Institue (Center for
Bioinformatics) |
OWL/RDF/LSID Utilization in NCI Cancer
Research Infrastructure |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0039/W3_Position_Paper.htm |
Hashmi, Nada |
University of Maryland |
Abstracting Workflows: Unifying
Bioinformatics Task Conceptualization and Specification Through
Semantic Web Services |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0040/abstracting_workflows.htm |
Hendler, Jim |
MIND (University of
Maryland) |
SWLS-MIND |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0022/SWLS-Mind.html |
Jones, Michael |
Novartis |
Program Committee / No position
paper |
|
Kashyap, Vipul |
Harvard Partners |
Can Semantic Web Technologies enable
Translational Medicine? |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0028/Semantic_Web_Translational_Medicine.pdf |
Kinoshita, June |
Alzheimer's Research Forum |
A KnowledgeBase Project for Alzheimer
Disease Research |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0035/MGH-AlzForum_SemWeb_paper.doc |
Koivunen,
Marja-Riitta |
Annotea Project |
Annotea Shared Bookmarks: connecting
life sciences research |
http://www.annotea.org/lifews2004/Annoteabookmarks.html |
Lancaster,
Justin |
Genstruct / HydroJoule |
Application of RDF/OWL in area of
Biological Knowledge Assembly and Automated Experimental
Loops |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0059/Lancaster_-_SWLS_Position_Paper.htm |
Lee, Sung |
Fujitsu Laboratories of
America |
|
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0052/Bio-Central_PositonPaperSW-LS-2004.doc |
Lopez, Xavier |
Oracle |
W3C-RDF Data Model in Oracle |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0054/W3C-RDF_Data_Model_in_Oracle.doc |
Lord, Philip |
University of Manchester |
Semantic Web for Life
Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0016/semantic_web_for_life_sciences_position.pdf |
Lund, Ben |
Nature Publishing Group |
Science Publishing and the Sematnic
Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/0024.htmlhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0024/SciencePublishingAndTheSemanticWeb.pdf |
Marenco, Luis |
Yale University |
Facilitating Domain Evolution of
Web-Database Portals Using the EAV/CR framework |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0072/LM_W3C-2004.doc |
Martin, Sean |
IBM |
Semantic Layered Research
Platform |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0069/Semantic_Layered_Research_Platform.pdf |
Meredith, Greg |
Djinnisys |
Lab-to-Lab Connectivity and Semantics
in the Life Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/att-0008/semwebls2.pdf |
Messai, Nizar |
LORIA équipe Orpailleur / Université
Henri Poincaré |
Intelligent Access to Genomic Sources
on the Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdfhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdfhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdf |
Moore, Josh |
German Cancer Research
Center |
(Annotea, OWL, LSID) A Framework for
Annotating High-Throughput Genome-wide Screens |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0005/loa.html |
Morgan,
Alexander |
MITRE |
Position Paper |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/0037.html |
Murray-Rust,
Peter |
University of Cambridge (UK) |
Towards a semantic web for chemistry in
lifescience |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0025/molsem.html |
Myers, Jim |
Pacific Northwest National
Laboratory |
Fine-grained References into Binary
Data and Data Virtualization Services |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0047/DataVirtualization.Myers.doc |
Napoli, Amedeo |
LORIA équipe Orpailleur / Université
Henri Poincaré |
Intelligent Access to Genomic Sources
on the Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdfhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdfhttp://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdf |
Neumann, Eric |
Sanofi-Aventis |
Semantic Needs in Drug
Discovery |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0023/SWLS_Position_Paper_Aventis.doc |
Noy, Natasha |
Stanford Medical Informatics |
Making Ontologies and Ontology
Libraries Work |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0032/NoyRubinMusen-SW-LS.pdf |
Oresic, Matej |
VTT: Technical Research Centre of
Finland |
Ontology Based Data Integration and
Context-Based Mining for Life Sciences |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0027/Gopal_etal_w3cSemWebLifeSci04.pdf |
Osman, Shazia |
LORIA équipe Orpailleur / Université
Henri Poincaré |
Intelligent Access to Genomic Sources
on the Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdf |
Patel, Chintan |
Department of Biomedical Informatics,
Columbia University |
Semantic Biomedical Services |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0055/sbs.pdf |
Pinter, Ron |
Technion – Israel Institute of
Technology |
The Bioinformatics Assay Environment:
towards an end-user interface to the SW-LS |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0061/SW-LS.htm |
Ravada, Siva |
Oracle |
W3C-RDF Data Model in Oracle |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0054/W3C-RDF_Data_Model_in_Oracle.doc |
Rechenmann,
Francois |
Inria Rhone-Alpes - Projet
HELIX |
|
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0056/BOX_Abstract.html |
Reynolds, Dave |
Hewlett-Packard |
Data Integration: some enabling
steps |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0007/HPL_Position_Paper_W3C-LS.html |
Richardson, Joel |
Jackson Laboratories |
Data Integration, Gene Ontology, and
the Mouse |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0002/W3C.doc |
Ritter, Otto |
AstraZeneca R&D |
Pharmaceutical R&D and the Role of
Semantics in Information Management and Decision-Making |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Oct/att-0016/semantic_aspects_of_pharma_r_d_info_-_october_2004.rtf |
Robbins, Robert |
Fred Hutchinson Cancer Research
Center |
Object Identity and Life Science
Research |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0050/position-01.pdf |
Roos, Marco |
Integrative Bioinformatics Unit - Micro
Array Department University of Amsterdam |
Future Application of Ontologies in
E-Bioscience |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0060/PositionPaperW3C_2004_final.pdf |
Rzepa, Henry |
Imperial College of London |
The INChI as an LSID for molecules in
lifescience |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0026/inchi.html |
Salamon, Hugh |
Berlex Biosciences |
Nor any other part belonging to a
gene |
http://www.w3.org/2004/09/berlex_pospaper_swls.html |
Schneider,
Andreas |
Department of Informatics, University
of Zurich |
Lightweight Knowledge Aggregation with
RDF/OWL |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0051/positionw3cswls.html |
Schroeder,
Michael |
European Network of Excellence REWERSE
on "Reasoning on the Web with Rules and Semantics" |
PROVA: Rule-based Java Scripting for a
Bioinformatics Semantic Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0053/prova.pdf |
Scott, Richard |
De Novo Pharmaceuticals |
|
|
Seaborne, Andy |
Hewlett-Packard |
Data Integration: some enabling
steps |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0007/HPL_Position_Paper_W3C-LS.html |
Sharifi, Mehrbod |
VGS, Inc. |
|
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0004/Position.html |
Sheth, Amit |
U. of Georgia / Semagix |
Semantic Web Technology in Support of
Bioinformatics for Glycan Expression |
http://lsdis.cs.uga.edu/Projects/Glycomics |
Shilitz, Gary |
National Center for Genome
Resources |
Semantic Moby Position Paper |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0036/smoby-w3c-sw-ls.html |
Shotton, David |
Image Bioinformatics Lab, University of
Oxford |
The use of Named Graphs to enable
ontology evolution |
http://www.bioimage.org/pub/paradigm.htm |
Slater, Ted |
Pfizer |
Applications of the Semantic Web in a
Global Pharmaceutical R&D Environment |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0062/sw-ls_pos_paper_tms_2004.doc |
Smaïl-Tabbone, Malika
|
LORIA équipe Orpailleur / Université
Henri Poincaré |
Intelligent Access to Genomic Sources
on the Web |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0058/Devignes-et-al.pdf |
Solbrig, Harold |
Mayo Clinic Center for Medical
Informatics |
Position Paper on the Life Sciences
Identifiers |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0013/MayoBMIPosition.html |
Stephens, Susie |
Oracle |
W3C-RDF_Data_Model_in_Oracle |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0019/W3C-RDF_Data_Model_in_Oracle.doc |
SUGAWARA Hideaki |
Japan Biological Information
Consortium |
From Web Services towards Semantic Web
in a Public Data Bank |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/0071.html |
Viari, Alain |
Inria Rhone-Alpes - Projet
HELIX |
Bio Oriel XML : standards for the
representation and exchange of biological information |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0056/BOX_Abstract.html |
Warzel, Denise |
National Cancer Institue (Center for
Bioinformatics) |
OWL/RDF/LSID Utilization in NCI Cancer
Research Infrastructure |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0039/W3_Position_Paper.htm |
Wilson, Ian |
University of Colorado |
Exploring Semantic Web Infrastructure
for Life Science Knowledge-bases |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0070/UCHSC_SWLS091504.html |
Wood, David |
Tucana Technologies |
The Urchin-KOWARI Project |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0018/UrchinKowariFINAL.html |
Zhang, Jianjun |
Genentech |
Call for a Gene Definition
Ontology |
http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0034/position.html |